Basic Information
Locus ID:
nbisL1-mrna-22325
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Short Name:
rps4
Description:
ribosomal protein S4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| unplaced_scaffold200 | 33911 | 35989 | - | nbisL1-mrna-22325 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.60 | 23,918.59 Da | 64.42 | 75.62 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00165 | S4 | 20 | 71 | 8.49989E-11 | IPR002942 |
| Pfam | PF01479 | S4 domain | 22 | 66 | 1.9E-8 | IPR002942 |
| SUPERFAMILY | SSF55174 | Alpha-L RNA-binding motif | 9 | 102 | 3.01E-19 | - |
| Gene3D | G3DSA:3.10.290.10 | - | 18 | 134 | 1.4E-14 | IPR036986 |
| SMART | SM00363 | s4_6 | 19 | 80 | 7.1E-6 | IPR002942 |
| ProSiteProfiles | PS50889 | S4 RNA-binding domain profile. | 22 | 90 | 9.701556 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 126 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G07734.1 | Alpha-L RNA-binding motif/Ribosomal protein S4 family protein. | 0 |
| RefSeq | YP_009430360.1 | ribosomal protein S4 (mitochondrion) [Bupleurum falcatum] | 0 |
| Q31708 | Small ribosomal subunit protein uS4m OS=Arabidopsis thaliana OX=3702 GN=RPS4 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2H4YAC7 | Ribosomal protein subunit S4 OS=Amphidasya ambigua OX=61933 GN=rps4 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah003022 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg60950 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1339, Seu_jg37 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000015172, gene:ENSEOMG00000015731 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4BG0021210, CQ.Regalona.r1.8BG0012300 |
| Arecaceae | Phoenix dactylifera | 2 | gene-KEH32_p22, gene-LOC120106306 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G07734.1, ATMG00290.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023100m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g25550.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniS02598g060.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0500 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g04970, gene.Cymno08g03410 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g22540, gene.Thate05g29300 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011838 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0353840.1 ... |
| Poaceae | Oryza coarctata | 3 | Ocoptg000098lG000010, Ocoptg000344lG000010 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K264900 |
| Poaceae | Thinopyrum elongatum | 7 | Tel1E01G484100, Tel1E01G562300, Tel1E01G718000 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1B02G262700.1.cds1, TraesCS2B02G283500.1.cds1 ... |
| Poaceae | Zea mays | 9 | Zm00001eb384400_P001, Zm00001eb436030_P001 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g29130, gene.Posoc05g15480 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-16525, nbisL1-mrna-31542, nbisL1-mrna-31548 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22939 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22325 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-25351, nbisL1-mrna-25459 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132637792 |
| Solanaceae | Solanum chilense | 1 | SOLCI005421900 |
| Tamaricaceae | Reaumuria soongarica | 7 | gene_10482, gene_15844, gene_1671, gene_2313, gene_2314 ... |
| Zosteraceae | Zostera marina | 2 | Zosma04g01160.v3.1, Zosma04g17580.v3.1 |