Basic Information
Locus ID:
nbisL1-mrna-22323
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002235F_pilon | 502140 | 512728 | + | nbisL1-mrna-22323 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 103,146.47 Da | 38.18 | 78.25 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07651 | ANTH domain | 840 | 899 | 3.1E-8 | IPR011417 |
| Pfam | PF00400 | WD domain, G-beta repeat | 364 | 397 | 3.4E-4 | IPR001680 |
| SUPERFAMILY | SSF48464 | ENTH/VHS domain | 840 | 898 | 1.11E-5 | IPR008942 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 324 | 573 | 4.12E-39 | IPR036322 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 508 | 821 | 2.12E-10 | - |
| Gene3D | G3DSA:1.25.40.90 | - | 838 | 900 | 1.6E-8 | IPR008942 |
| Gene3D | G3DSA:2.130.10.10 | - | 260 | 453 | 1.0E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 454 | 814 | 5.4E-14 | IPR015943 |
| SMART | SM00320 | WD40_4 | 446 | 487 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 490 | 530 | 31.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 713 | 754 | 450.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 357 | 397 | 2.4E-6 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 3.9E-15 | IPR006595 |
| SMART | SM00320 | WD40_4 | 400 | 441 | 0.02 | IPR001680 |
| SMART | SM00320 | WD40_4 | 533 | 574 | 75.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 311 | 351 | 8.1 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 364 | 406 | 10.70896 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 364 | 401 | 8.781968 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.923718 | IPR006595 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 384 | 398 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_022749663.1 | - | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6P5ZA36 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda glauca | 5 | Sgl13166, Sgl15271, Sgl18389, Sgl35793, Sgl63808 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4BG0018880 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30080030, pistato.v30081240, pistato.v30099810 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G010590 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.130.V1.1, AsparagusV1_03.1555.V1.1 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr29G011090 |
| Poaceae | Zea mays | 1 | Zm00001eb019610_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-39020 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22323 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132639592 |