Basic Information
Locus ID:
nbisL1-mrna-22320
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000234F_pilon | 432005 | 437671 | - | nbisL1-mrna-22320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 159,743.27 Da | 36.06 | 105.61 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 977 | 1168 | 4.09159E-58 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1191 | 1411 | 1.02503E-123 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 630 | 830 | 8.28099E-113 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 317 | 604 | 2.20849E-101 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 987 | 1119 | 2.5E-13 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 317 | 583 | 2.8E-25 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1211 | 1358 | 7.4E-31 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 648 | 782 | 2.5E-20 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 975 | 1175 | 3.92E-30 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 307 | 609 | 7.72E-31 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 629 | 852 | 2.41E-57 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1186 | 1419 | 5.62E-67 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 608 | 862 | 4.1E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1177 | 1429 | 1.4E-80 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 285 | 607 | 2.0E-44 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 975 | 1174 | 3.6E-34 | IPR036640 |
| SMART | SM00382 | AAA_5 | 657 | 830 | 3.8E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1219 | 1411 | 2.3E-12 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1193 | 1427 | 18.607571 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 630 | 853 | 22.609152 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 316 | 596 | 33.061543 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 977 | 1156 | 20.462868 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 755 | 769 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 864 | 883 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021606750.2 | ABC transporter C family member 3 isoform X1 [Manihot esculenta] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2NFS0 | ABC-type xenobiotic transporter OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology