Basic Information
Locus ID:
nbisL1-mrna-22307
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 13360628 | 13361504 | + | nbisL1-mrna-22307 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.39 | 9,350.62 Da | 58.70 | 96.51 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00627 | UBA/TS-N domain | 39 | 74 | 1.3E-10 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 17 | 80 | 1.08E-13 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 31 | 78 | 7.2E-19 | - |
| SMART | SM00165 | uba_6 | 39 | 76 | 4.4E-5 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 36 | 77 | 13.149322 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 33 | 49 | 8.8E-18 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 65 | 80 | 8.8E-18 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 50 | 64 | 8.8E-18 | IPR004806 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_022890872.1 | ubiquitin receptor RAD23d-like [Olea europaea var. sylvestris] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A3S3MU90 | Ubiquitin receptor RAD23 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_00820900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology