Basic Information
Locus ID:
nbisL1-mrna-22302
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002235F_pilon | 351493 | 358087 | - | nbisL1-mrna-22302 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 56,648.84 Da | 28.57 | 100.83 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 203 | 305 | 4.45464E-27 | - |
| CDD | cd00030 | C2 | 382 | 475 | 4.45464E-27 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 11 | 187 | 9.7E-15 | IPR039010 |
| Pfam | PF00168 | C2 domain | 380 | 475 | 2.5E-24 | IPR000008 |
| Pfam | PF00168 | C2 domain | 201 | 305 | 9.9E-25 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 377 | 499 | 5.98E-33 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 199 | 331 | 1.99E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 194 | 329 | 1.7E-34 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 362 | 498 | 2.5E-34 | IPR035892 |
| SMART | SM00239 | C2_3c | 202 | 302 | 1.6E-24 | IPR000008 |
| SMART | SM00239 | C2_3c | 381 | 479 | 1.0E-25 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 6 | 188 | 31.017443 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 363 | 480 | 20.761768 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 182 | 303 | 21.216278 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 423 | 436 | 2.4E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 445 | 453 | 2.4E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 397 | 409 | 2.4E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_015581849.1 | synaptotagmin-5 [Ricinus communis] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2K0D7 | Synaptotagmin-5 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology