Basic Information
Locus ID:
nbisL1-mrna-22269
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 536496 | 542184 | - | nbisL1-mrna-22269 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 98,289.08 Da | 47.26 | 81.73 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 308 | 867 | 4.0E-72 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 34 | 131 | 1.1E-22 | IPR006615 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 305 | 868 | 2.94E-96 | IPR038765 |
| SUPERFAMILY | SSF143791 | DUSP-like | 7 | 131 | 2.22E-28 | IPR035927 |
| Gene3D | G3DSA:3.10.20.90 | - | 146 | 231 | 1.5E-9 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 1 | 145 | 3.2E-34 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 654 | 870 | 2.9E-42 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 293 | 528 | 4.4E-67 | - |
| SMART | SM00695 | dusp | 29 | 134 | 6.2E-28 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 10 | 131 | 19.698748 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 307 | 872 | 48.629288 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 308 | 323 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 845 | 862 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10590.1 | ubiquitin-specific protease 10. encodes a member of the ubiquitin-specific protease family, UBP10 | 0 |
| RefSeq | XP_012086627.2 | ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas] | 0 |
| Q93Y01 | Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana OX=3702 GN=UBP9 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2KY21 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology