Basic Information
Locus ID:
nbisL1-mrna-22247
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the glycosyl hydrolase 18 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002235F_pilon | 24317 | 25847 | + | nbisL1-mrna-22247 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.72 | 42,609.02 Da | 35.68 | 79.11 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 31 | 369 | 5.52261E-149 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 36 | 363 | 1.1E-75 | IPR001223 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 269 | 334 | 4.37E-11 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 35 | 363 | 6.75E-70 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 51 | 363 | 3.0E-102 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 268 | 334 | 3.0E-102 | IPR029070 |
| SMART | SM00636 | 2g34 | 33 | 363 | 5.4E-91 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 33 | 379 | 66.66906 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 139 | 147 | - | IPR001579 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_052305189.1 | - | 0 |
| U5N4E3 | Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2JMW1 | Uncharacterized protein MANES_14G141000 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology