Basic Information
Locus ID:
nbisL1-mrna-22196
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000013F_pilon | 38973 | 40013 | - | nbisL1-mrna-22196 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 38,566.01 Da | 52.03 | 72.08 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 13 | 52 | 5.2E-4 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 164 | 209 | 2.0E-8 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 119 | 161 | 2.9E-7 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 88 | 278 | 2.22E-35 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 55 | 3.66E-6 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 47 | 309 | 6.0E-35 | IPR015915 |
| SMART | SM00256 | fbox_2 | 15 | 55 | 4.8E-4 | IPR001810 |
| SMART | SM00612 | kelc_smart | 126 | 174 | 4.0E-4 | IPR006652 |
| SMART | SM00612 | kelc_smart | 175 | 222 | 1.9E-4 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44130.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_002309282.1 | F-box/kelch-repeat protein At1g15670 [Populus trichocarpa] | 0 |
| O80582 | F-box/kelch-repeat protein At2g44130 OS=Arabidopsis thaliana OX=3702 GN=At2g44130 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2L2B4 | F-box/kelch-repeat protein At1g15670-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology