Basic Information
Locus ID:
nbisL1-mrna-22195
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the FPP GGPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 10307831 | 10308928 | + | nbisL1-mrna-22195 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.86 | 39,456.06 Da | 32.88 | 98.14 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00685 | Trans_IPPS_HT | 102 | 363 | 2.92162E-92 | IPR000092 |
| Pfam | PF00348 | Polyprenyl synthetase | 102 | 339 | 5.2E-56 | IPR000092 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 77 | 344 | 2.67E-88 | IPR008949 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 68 | 365 | 9.7E-105 | IPR008949 |
| ProSitePatterns | PS00444 | Polyprenyl synthases signature 2. | 283 | 295 | - | IPR033749 |
| ProSitePatterns | PS00723 | Polyprenyl synthases signature 1. | 151 | 167 | - | IPR033749 |
| SFLD | SFLDS00005 | Isoprenoid Synthase Type I | 78 | 363 | 0.0 | - |
| SFLD | SFLDG01017 | Polyprenyl Transferase Like | 78 | 363 | 0.0 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Module:
Reaction:
R01658 (Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate)
R02003 (Geranyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + trans,trans-Farnesyl diphosphate)
R02061 (trans,trans-Farnesyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranylgeranyl diphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36810.1 | geranylgeranyl pyrophosphate synthase 1. Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots. | 0 |
| RefSeq | XP_002305196.4 | geranylgeranyl pyrophosphate synthase, chloroplastic [Populus trichocarpa] | 0 |
| Q42698 | Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Catharanthus roseus OX=4058 GN=GGPS1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8X8D4E7 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_017231 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology