Basic Information
Locus ID:
nbisL1-mrna-22186
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 9959333 | 9960595 | - | nbisL1-mrna-22186 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 47,028.24 Da | 36.69 | 99.98 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 9 | 50 | 9.68221E-24 | - |
| Pfam | PF04564 | U-box domain | 5 | 77 | 4.2E-20 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 5 | 82 | 7.07E-28 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 150 | 384 | 2.04E-19 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 103 | 396 | 5.0E-21 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 79 | 8.3E-27 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 8 | 72 | 1.9E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 4 | 79 | 35.800316 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_006372525.2 | U-box domain-containing protein 21 [Populus trichocarpa] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | U5FLQ4 | RING-type E3 ubiquitin transferase OS=Populus trichocarpa OX=3694 GN=POPTR_017G135000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology