Basic Information
Locus ID:
nbisL1-mrna-22182
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
metal tolerance protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 17382840 | 17388778 | + | nbisL1-mrna-22182 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 46,574.04 Da | 42.85 | 89.17 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16916 | Dimerisation domain of Zinc Transporter | 322 | 395 | 4.2E-13 | IPR027470 |
| Pfam | PF01545 | Cation efflux family | 116 | 182 | 1.1E-11 | IPR002524 |
| Pfam | PF01545 | Cation efflux family | 223 | 314 | 5.7E-11 | IPR002524 |
| SUPERFAMILY | SSF160240 | Cation efflux protein cytoplasmic domain-like | 319 | 395 | 2.49E-17 | IPR036837 |
| SUPERFAMILY | SSF161111 | Cation efflux protein transmembrane domain-like | 109 | 316 | 3.14E-32 | IPR027469 |
| Gene3D | G3DSA:3.30.70.1350 | Cation efflux protein, cytoplasmic domain | 321 | 396 | 1.2E-17 | IPR036837 |
| Gene3D | G3DSA:1.20.1510.10 | Cation efflux protein transmembrane domain | 111 | 314 | 6.3E-34 | IPR027469 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79520.1 | Cation efflux family protein. | 0 |
| RefSeq | XP_011014010.1 | PREDICTED: metal tolerance protein 9-like isoform X2 [Populus euphratica] | 0 |
| Q9SAJ7 | Metal tolerance protein 9 OS=Arabidopsis thaliana OX=3702 GN=MTP9 PE=3 SV=2 | 0 | |
| TrEMBL | A0A3N7FSR5 | ZT_dimer domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G172800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology