Basic Information
Locus ID:
nbisL1-mrna-22153
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001290F_pilon | 236297 | 241361 | - | nbisL1-mrna-22153 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 44,010.59 Da | 33.13 | 85.86 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00850 | Histone deacetylase domain | 24 | 282 | 3.0E-67 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 6 | 342 | 4.22E-108 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 1 | 354 | 1.6E-122 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 1 | 381 | 3.0E-181 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 117 | 140 | 3.5E-23 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 149 | 164 | 3.5E-23 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 196 | 209 | 2.2E-18 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 26 | 43 | 2.2E-18 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 213 | 231 | 2.2E-18 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 235 | 245 | 3.5E-23 | IPR000286 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44680.1 | histone deacetylase 9. Class I RPD3 type protein | 0 |
| RefSeq | XP_021610208.1 | histone deacetylase 9 isoform X1 [Manihot esculenta] | 0 |
| Q8H0W2 | Histone deacetylase 9 OS=Arabidopsis thaliana OX=3702 GN=HDA9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9VYD9 | Histone deacetylase OS=Manihot esculenta OX=3983 GN=MANES_04G007000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology