Basic Information
Locus ID:
nbisL1-mrna-22152
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 17074861 | 17088318 | - | nbisL1-mrna-22152 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 114,100.47 Da | 30.86 | 89.94 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 709 | 971 | 3.6282E-96 | - |
| Pfam | PF13855 | Leucine rich repeat | 300 | 359 | 1.2E-8 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 705 | 970 | 6.1E-47 | IPR001245 |
| Pfam | PF11721 | Malectin domain | 435 | 620 | 4.7E-47 | IPR021720 |
| SUPERFAMILY | SSF52058 | L domain-like | 104 | 407 | 2.69E-49 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 686 | 971 | 2.46E-80 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 95 | 267 | 3.5E-44 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 779 | 983 | 2.3E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 665 | 778 | 5.2E-36 | - |
| Gene3D | G3DSA:2.60.120.430 | - | 434 | 625 | 3.9E-37 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 268 | 430 | 1.8E-29 | IPR032675 |
| SMART | SM00220 | serkin_6 | 703 | 971 | 2.3E-32 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 324 | 346 | 7.419328 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 703 | 977 | 37.742741 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 823 | 835 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1006 | 1031 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1006 | 1044 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56140.1 | Leucine-rich repeat transmembrane protein kinase. | 0 |
| RefSeq | XP_021615709.1 | probable LRR receptor-like serine/threonine-protein kinase At1g56140 isoform X1 [Manihot esculenta] | 0 |
| C0LGH3 | Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana OX=3702 GN=At1g56140 PE=2 SV=2 | 0 | |
| TrEMBL | A0A127AUU8 | LRR-RLK OS=Vernicia fordii OX=73154 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology