Basic Information
Locus ID:
nbisL1-mrna-22142
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 16971533 | 16988151 | + | nbisL1-mrna-22142 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 114,193.16 Da | 37.35 | 94.42 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 703 | 968 | 1.13596E-95 | - |
| Pfam | PF13855 | Leucine rich repeat | 298 | 357 | 3.3E-8 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 698 | 959 | 2.2E-45 | IPR000719 |
| Pfam | PF11721 | Malectin domain | 432 | 620 | 1.1E-43 | IPR021720 |
| SUPERFAMILY | SSF52058 | L domain-like | 107 | 404 | 1.19E-50 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 679 | 968 | 1.07E-78 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 89 | 286 | 2.0E-46 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 773 | 980 | 1.6E-57 | - |
| Gene3D | G3DSA:2.60.120.430 | - | 431 | 625 | 4.4E-36 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 676 | 772 | 1.5E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 287 | 406 | 2.3E-23 | IPR032675 |
| SMART | SM00220 | serkin_6 | 697 | 968 | 5.5E-32 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 322 | 344 | 7.018892 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 697 | 974 | 37.573132 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 703 | 725 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 817 | 829 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56140.1 | Leucine-rich repeat transmembrane protein kinase. | 0 |
| RefSeq | XP_021615709.1 | probable LRR receptor-like serine/threonine-protein kinase At1g56140 isoform X1 [Manihot esculenta] | 0 |
| C0LGH3 | Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana OX=3702 GN=At1g56140 PE=2 SV=2 | 0 | |
| TrEMBL | A0A127AUU8 | LRR-RLK OS=Vernicia fordii OX=73154 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology