Basic Information
Locus ID:
nbisL1-mrna-22120
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000211F_pilon | 316347 | 318473 | - | nbisL1-mrna-22120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 77,303.93 Da | 50.04 | 68.35 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11449 | bHLH_AtAIB_like | 522 | 598 | 5.96089E-48 | - |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 82 | 268 | 3.5E-53 | IPR025610 |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 529 | 574 | 5.2E-10 | IPR011598 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 528 | 594 | 6.15E-18 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 524 | 602 | 9.1E-17 | IPR036638 |
| SMART | SM00353 | finulus | 531 | 580 | 2.8E-16 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 525 | 574 | 17.174028 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 478 | 535 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 442 | 463 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 535 | - | - |
| Coils | Coil | Coil | 571 | 598 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32640.1 | Basic helix-loop-helix (bHLH) DNA-binding family protein. Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue lightmediated photomorphogenic growth and blue and far-red-lightregulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression. | 0 |
| RefSeq | XP_021664832.1 | transcription factor MYC2-like [Hevea brasiliensis] | 0 |
| A0A3Q7HRZ6 | Transcription factor MYC2 OS=Solanum lycopersicum OX=4081 GN=MYC2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KBI0 | Uncharacterized protein MANES_17G016000 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology