Basic Information
Locus ID:
nbisL1-mrna-22099
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001337F_pilon | 925543 | 932785 | + | nbisL1-mrna-22099 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.30 | 166,173.06 Da | 40.44 | 107.22 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 918 | 1212 | 2.8085E-94 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 297 | 585 | 5.95759E-94 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1235 | 1455 | 8.64081E-120 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 611 | 811 | 4.44983E-105 | - |
| Pfam | PF00005 | ABC transporter | 629 | 763 | 6.3E-19 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 297 | 564 | 5.1E-28 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 935 | 1164 | 4.6E-30 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1254 | 1402 | 4.0E-28 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1230 | 1466 | 1.65E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 295 | 591 | 3.14E-35 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 605 | 827 | 6.48E-57 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 918 | 1213 | 3.01E-49 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 268 | 595 | 5.7E-49 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 883 | 1218 | 3.6E-55 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1220 | 1473 | 1.2E-78 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 606 | 837 | 1.8E-68 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1263 | 1455 | 8.2E-14 | IPR003593 |
| SMART | SM00382 | AAA_5 | 638 | 811 | 6.7E-10 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1239 | 1471 | 16.793522 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 296 | 577 | 35.516251 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 611 | 834 | 22.015583 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 920 | 1200 | 35.786251 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 736 | 750 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 850 | 894 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 879 | 894 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 858 | 874 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_021659378.1 | putative ABC transporter C family member 15 isoform X1 [Hevea brasiliensis] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2JCN5 | ABC-type xenobiotic transporter OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology