Basic Information
Locus ID:
nbisL1-mrna-2209
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
3-phosphoinositide-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 2088553 | 2097510 | - | nbisL1-mrna-2209 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 94,271.58 Da | 39.16 | 85.87 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05581 | STKc_PDK1 | 126 | 395 | 3.57486E-136 | IPR039046 |
| CDD | cd09008 | MTAN | 587 | 841 | 1.0847E-32 | - |
| Pfam | PF01048 | Phosphorylase superfamily | 579 | 843 | 2.6E-27 | IPR000845 |
| Pfam | PF14593 | PH domain | 470 | 545 | 6.3E-22 | IPR033931 |
| Pfam | PF00069 | Protein kinase domain | 130 | 395 | 6.4E-66 | IPR000719 |
| SUPERFAMILY | SSF53167 | Purine and uridine phosphorylases | 587 | 844 | 1.8E-24 | IPR035994 |
| SUPERFAMILY | SSF50729 | PH domain-like | 389 | 545 | 8.97E-17 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 99 | 416 | 4.59E-87 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 212 | 409 | 1.8E-96 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 443 | 547 | 1.1E-18 | IPR011993 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 126 | 211 | 1.8E-96 | - |
| Gene3D | G3DSA:3.40.50.1580 | Nucleoside phosphorylase domain | 567 | 849 | 4.5E-32 | IPR035994 |
| SMART | SM00220 | serkin_6 | 128 | 395 | 1.2E-93 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 128 | 395 | 49.346752 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 247 | 259 | - | IPR008271 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko01524 (Platinum drug resistance)
map01524 (Platinum drug resistance)
ko03320 (PPAR signaling pathway)
map03320 (PPAR signaling pathway)
ko04011 (MAPK signaling pathway - yeast)
map04011 (MAPK signaling pathway - yeast)
ko04068 (FoxO signaling pathway)
map04068 (FoxO signaling pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04140 (Autophagy - animal)
map04140 (Autophagy - animal)
ko04150 (mTOR signaling pathway)
map04150 (mTOR signaling pathway)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
map04210 (Apoptosis)
map04660 (T cell receptor signaling pathway)
map04664 (Fc epsilon RI signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10540.1 | 3-phosphoinositide-dependent protein kinase. | 0 |
| RefSeq | XP_038993144.1 | 3-phosphoinositide-dependent protein kinase 2-like isoform X1 [Hibiscus syriacus] | 0 |
| Q4V3C8 | 3-phosphoinositide-dependent protein kinase 2 OS=Arabidopsis thaliana OX=3702 GN=PDPK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1R3KJA6 | non-specific serine/threonine protein kinase OS=Corchorus olitorius OX=93759 GN=COLO4_07609 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg14508, jg2812, jg34384 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9608 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007327 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg36001, Sbi_jg560 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4094 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015942 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl64527 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010410, gene:ENSEOMG00000026612 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0012050, CQ.Regalona.r1.4BG0014280 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30170260 |
| Apiaceae | Apium graveolens | 2 | Ag11G04557, Ag3G01751 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G019660, contig69238872G000010 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702739 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.697.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G24139 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G10540.1, AT5G04510.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10013385m.g.v1.0, Thhalv10020612m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g08820.v2.2, Sp6g38240.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g056000.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1164 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1176 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g00700 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g01480 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1913 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1221 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00033508 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G19300 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4030, BH02.4043, CH02.4073 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0041460, gene-QOZ80_1BG0091480 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0298800.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_048118 |
| Poaceae | Oryza coarctata | 2 | Oco01G026130, Oco02G027130 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g65230.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G351900 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0504276, Pt_Chr0504328, Pt_Chr0601255, Pt_Ctg00085 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G003500, Chr03G021160, Chr05G029770, Chr08G021110 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G611400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG054950, gene_TRIDC3BG061570 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G383400.1, TraesCS3B02G415800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb146330_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-11244, nbis-gene-28607 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11639, Zma_g9098 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1506, evm.TU.LG22.398 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g01790 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.1145 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26187 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1035, nbisL1-mrna-4653 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-21779, nbisL1-mrna-4380 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000004l.320, evm.TU.utg000008l.843 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001227, Maker00003936 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16315, nbisL1-mrna-2209 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-21415, nbisL1-mrna-9611 |
| Salicaceae | Populus euphratica | 2 | populus_peu06171, populus_peu20015 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132613950, gene-LOC132637383 |
| Solanaceae | Solanum chilense | 1 | SOLCI002415800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107004867, gene-LOC107013878 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.32418_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G1072, TC11G1645 |
| Zosteraceae | Zostera marina | 2 | Zosma01g42380.v3.1, Zosma03g37030.v3.1 |