Basic Information
Locus ID:
nbisL1-mrna-22060
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Short Name:
RHC1A
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 4245588 | 4246520 | + | nbisL1-mrna-22060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.52 | 34,263.45 Da | 60.84 | 45.32 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 187 | 228 | 1.85191E-25 | - |
| Pfam | PF13639 | Ring finger domain | 186 | 228 | 7.3E-12 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 6 | 37 | 6.1E-10 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 167 | 234 | 2.65E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 150 | 234 | 7.8E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 187 | 227 | 3.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 187 | 228 | 12.533537 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 310 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 310 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_034919986.1 | probable E3 ubiquitin-protein ligase RHC1A [Populus alba] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2JMP4 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology