Basic Information
Locus ID:
nbisL1-mrna-22014
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Myb-related protein 308-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000129F_pilon | 1076728 | 1094065 | + | nbisL1-mrna-22014 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 51,451.58 Da | 52.00 | 87.77 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00167 | SANT | 118 | 142 | 2.36964E-6 | IPR001005 |
| Pfam | PF00249 | Myb-like DNA-binding domain | 118 | 142 | 7.6E-6 | IPR017930 |
| SUPERFAMILY | SSF57850 | RING/U-box | 363 | 389 | 6.27E-6 | - |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 117 | 152 | 7.18E-8 | IPR009057 |
| Gene3D | G3DSA:1.10.10.60 | - | 67 | 169 | 7.0E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 358 | 423 | 1.1E-7 | IPR013083 |
| ProSiteProfiles | PS51294 | Myb-type HTH DNA-binding domain profile. | 118 | 146 | 14.477156 | IPR017930 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 109 | 142 | 6.771437 | IPR001005 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G22640.2 | - | 0 |
| RefSeq | XP_028096657.1 | myb-related protein 308-like [Camellia sinensis] | 0 |
| Q9S9K9 | Transcription factor MYB3 OS=Arabidopsis thaliana OX=3702 GN=MYB3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2Q5U4 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22014 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000013l.172 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-21058, nbisL1-mrna-21335 |