Basic Information
Locus ID:
nbisL1-mrna-2200
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 2222000 | 2227165 | - | nbisL1-mrna-2200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 99,836.60 Da | 70.95 | 63.20 | -1.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 814 | 854 | 1.83074E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 812 | 859 | 7.9E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 814 | 860 | 7.46E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 804 | 865 | 2.3E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 815 | 854 | 10.748424 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 147 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 685 | 699 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 562 | 603 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 677 | 700 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 469 | 538 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 79 | - | - |
| Coils | Coil | Coil | 744 | 764 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021659180.1 | uncharacterized protein LOC110649078 isoform X1 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A5N6QFZ2 | RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_001773 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology