Basic Information
Locus ID:
nbisL1-mrna-2200
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 18578868 | 18582228 | - | nbisL1-mrna-2200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 100,347.77 Da | 39.17 | 93.11 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 230 | 252 | 0.19 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 496 | 553 | 1.7E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 162 | 218 | 5.7E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 68 | 3.1E-10 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 702 | 838 | 1.5E-29 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 649 | 908 | 9.04E-61 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 443 | 574 | 8.16E-20 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 30 | 357 | 3.74E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 108 | 1.9E-9 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 713 | 914 | 4.0E-56 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 406 | 574 | 8.0E-26 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 119 | 379 | 1.4E-49 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 629 | 711 | 7.6E-11 | - |
| SMART | SM00220 | serkin_6 | 668 | 915 | 1.3E-12 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 602 | 911 | 27.84894 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 757 | 769 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 674 | 696 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 573 | 598 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02130.2 | - | 0 |
| RefSeq | XP_038998335.1 | LRR receptor-like serine/threonine-protein kinase RPK2 [Hibiscus syriacus] | 0 |
| Q9S7I6 | LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana OX=3702 GN=RPK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J9E0X3 | Protein kinase domain-containing protein OS=Gossypium trilobum OX=34281 GN=Gotri_015679 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology