Basic Information
Locus ID:
nbisL1-mrna-21992
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
DNA repair protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001337F_pilon | 19678 | 26748 | + | nbisL1-mrna-21992 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 33,742.82 Da | 48.96 | 80.32 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 3 | 76 | 2.6846E-31 | - |
| Pfam | PF00240 | Ubiquitin family | 5 | 78 | 8.4E-17 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 240 | 295 | 9.2E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 139 | 177 | 8.5E-13 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 136 | 184 | 1.4E-10 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 238 | 303 | 5.23E-22 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 3 | 85 | 7.6E-22 | IPR029071 |
| Gene3D | G3DSA:1.10.10.540 | - | 230 | 295 | 7.7E-27 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 132 | 182 | 1.3E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 82 | 7.3E-27 | - |
| SMART | SM00165 | uba_6 | 139 | 179 | 1.2E-5 | IPR015940 |
| SMART | SM00213 | ubq_7 | 3 | 77 | 9.6E-23 | IPR000626 |
| SMART | SM00727 | CBM | 236 | 281 | 5.3E-5 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 3 | 302 | 1.2E-89 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 137 | 180 | 12.16134 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 3 | 81 | 19.107122 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 124 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_022715399.1 | ubiquitin receptor RAD23b-like isoform X2 [Durio zibethinus] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A2P2KD86 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology