Basic Information
Locus ID:
nbisL1-mrna-2199
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
WRKY transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 20895943 | 20899136 | + | nbisL1-mrna-2199 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.48 | 58,488.54 Da | 61.02 | 61.30 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03106 | WRKY DNA -binding domain | 264 | 320 | 2.5E-26 | IPR003657 |
| Pfam | PF03106 | WRKY DNA -binding domain | 443 | 479 | 1.7E-11 | IPR003657 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 262 | 322 | 1.16E-26 | IPR036576 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 443 | 481 | 3.4E-13 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 256 | 323 | 4.0E-29 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 434 | 482 | 7.8E-16 | IPR036576 |
| SMART | SM00774 | WRKY_cls | 443 | 480 | 2.1E-9 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 263 | 321 | 1.4E-38 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 258 | 322 | 24.822235 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 443 | 481 | 21.757769 | IPR003657 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 313 | 414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 269 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 344 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13960.1 | WRKY DNA-binding protein 4. Encodes WRKY DNA-binding protein 4 (WRKY4). | 0 |
| RefSeq | XP_034915453.1 | probable WRKY transcription factor 3 [Populus alba] | 0 |
| Q9XI90 | Probable WRKY transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=WRKY4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2LKB2 | Putative WRKY transcription factor 3 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology