Basic Information
Locus ID:
nbisL1-mrna-21960
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002184F_pilon | 611626 | 614064 | + | nbisL1-mrna-21960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 37,980.24 Da | 32.79 | 76.32 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12906 | RING-variant domain | 253 | 297 | 1.7E-5 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 231 | 300 | 3.53E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 229 | 301 | 4.1E-13 | IPR013083 |
| SMART | SM00744 | ringv_2 | 233 | 298 | 2.5E-11 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 226 | 304 | 16.163052 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 156 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G34200.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_020541304.1 | uncharacterized protein LOC105649689 [Jatropha curcas] | 0 |
| TrEMBL | A0A2P2NIP3 | Uncharacterized protein LOC8275155 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology