Basic Information
Locus ID:
nbisL1-mrna-21933
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
transcriptional co-repressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002184F_pilon | 340308 | 347372 | + | nbisL1-mrna-21933 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 73,822.53 Da | 51.79 | 73.35 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 628 | 665 | 0.039 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 401 | 426 | 6.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 438 | 468 | 7.3E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 388 | 665 | 8.98E-47 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 562 | 665 | 8.4E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 389 | 561 | 7.2E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 626 | 665 | 0.021 | IPR001680 |
| SMART | SM00320 | WD40_4 | 429 | 468 | 5.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 387 | 426 | 8.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 472 | 512 | 0.18 | IPR001680 |
| SMART | SM00320 | WD40_4 | 584 | 623 | 410.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 633 | 665 | 11.497408 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 394 | 429 | 11.109979 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 394 | 429 | 9.309238 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 436 | 468 | 9.704691 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 633 | 665 | 12.212779 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 9 | 41 | 8.871812 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 479 | 514 | 8.503359 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 436 | 477 | 11.811761 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 413 | 427 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 499 | 513 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 652 | 665 | 6.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 413 | 427 | 6.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 455 | 469 | 6.9E-6 | IPR020472 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_021667376.1 | transcriptional corepressor LEUNIG-like [Hevea brasiliensis] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A7N2LPW9 | LisH domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology