Basic Information
Locus ID:
nbisL1-mrna-2193
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 18490873 | 18495098 | - | nbisL1-mrna-2193 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 66,530.94 Da | 51.68 | 91.53 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 265 | 565 | 1.99185E-48 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 528 | 565 | 6.9E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 263 | 299 | 6.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 349 | 385 | 0.0075 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 309 | 344 | 0.0064 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 259 | 565 | 1.94E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 256 | 514 | 4.4E-54 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 515 | 587 | 1.0E-15 | IPR015943 |
| SMART | SM00320 | WD40_4 | 347 | 386 | 0.0032 | IPR001680 |
| SMART | SM00320 | WD40_4 | 472 | 523 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 526 | 566 | 7.2E-12 | IPR001680 |
| SMART | SM00668 | ctlh | 95 | 152 | 0.0092 | IPR006595 |
| SMART | SM00320 | WD40_4 | 305 | 344 | 6.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 430 | 468 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 261 | 300 | 4.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 388 | 428 | 98.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 353 | 14.251289 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 312 | 349 | 10.891048 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 533 | 575 | 14.61889 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 105 | 152 | 9.591034 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 533 | 569 | 11.919224 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 268 | 301 | 12.847725 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 62 | 94 | 7.879037 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 268 | 301 | 10.68014 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 287 | 301 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_017611084.1 | PREDICTED: WD repeat-containing protein 26-like [Gossypium arboreum] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5D2F8E1 | Transducin family protein / WD-40 repeat family protein OS=Gossypium darwinii OX=34276 GN=ES288_A09G009900v1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology