Basic Information
Locus ID:
nbisL1-mrna-21886
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 5166907 | 5167974 | - | nbisL1-mrna-21886 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 38,853.50 Da | 65.53 | 68.42 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 190 | 231 | 7.89198E-24 | - |
| Pfam | PF13639 | Ring finger domain | 189 | 231 | 2.1E-10 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 10 | 46 | 2.3E-13 | IPR039525 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 252 | 347 | 2.3E-36 | IPR010543 |
| SUPERFAMILY | SSF57850 | RING/U-box | 170 | 235 | 1.59E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 155 | 237 | 1.8E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 190 | 230 | 1.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 190 | 231 | 12.208971 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_021657424.1 | E3 ubiquitin-protein ligase RDUF2-like [Hevea brasiliensis] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P5EZ78 | RING-type E3 ubiquitin transferase OS=Trema orientale OX=63057 GN=TorRG33x02_134770 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology