Basic Information
Locus ID:
nbisL1-mrna-21879
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000129F_pilon | 42802 | 49865 | - | nbisL1-mrna-21879 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 64,358.89 Da | 37.02 | 98.84 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 258 | 549 | 4.39808E-48 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 302 | 337 | 0.0073 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 255 | 291 | 9.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 469 | 506 | 0.035 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 512 | 549 | 6.7E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 250 | 549 | 1.22E-62 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 246 | 512 | 3.9E-55 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 513 | 560 | 6.2E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 253 | 292 | 2.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 465 | 507 | 0.26 | IPR001680 |
| SMART | SM00320 | WD40_4 | 510 | 550 | 3.6E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 423 | 461 | 87.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 340 | 379 | 0.13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 381 | 421 | 7.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 298 | 337 | 1.0E-6 | IPR001680 |
| SMART | SM00668 | ctlh | 90 | 147 | 4.5E-5 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 517 | 552 | 11.523771 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 260 | 294 | 12.647216 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 90 | 147 | 9.973413 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 57 | 89 | 8.766298 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 305 | 346 | 14.017362 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 260 | 294 | 10.521959 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 305 | 342 | 10.68014 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 517 | 552 | 13.917108 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 279 | 293 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 366 | 380 | 6.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 537 | 551 | 6.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 279 | 293 | 6.1E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_012068544.1 | WD repeat-containing protein 26 homolog isoform X1 [Jatropha curcas] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MMZ9 | WD-repeat protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology