Basic Information
Locus ID:
nbisL1-mrna-21867
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
spa1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 13741790 | 13748763 | - | nbisL1-mrna-21867 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 108,595.59 Da | 58.37 | 83.82 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 826 | 861 | 0.022 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 722 | 759 | 9.9E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 635 | 963 | 1.55E-48 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 141 | 406 | 2.18E-19 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 144 | 411 | 3.3E-25 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 612 | 966 | 1.0E-114 | IPR015943 |
| SMART | SM00320 | WD40_4 | 780 | 819 | 0.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 631 | 666 | 2.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 680 | 716 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 920 | 964 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 870 | 909 | 16.0 | IPR001680 |
| SMART | SM00220 | serkin_6 | 25 | 401 | 9.3E-5 | IPR000719 |
| SMART | SM00320 | WD40_4 | 823 | 861 | 1.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 719 | 759 | 1.2E-8 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 401 | 11.863386 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 830 | 863 | 9.572873 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 830 | 863 | 11.44416 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 726 | 761 | 10.390142 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 726 | 761 | 12.480124 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 848 | 862 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 703 | 717 | 5.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 746 | 760 | 5.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 848 | 862 | 5.0E-6 | IPR020472 |
| Coils | Coil | Coil | 398 | 427 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.3 | - | 0 |
| RefSeq | XP_021655518.1 | protein SPA1-RELATED 3-like isoform X1 [Hevea brasiliensis] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MKL9 | Protein SPA1-RELATED 3 isoform X2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology