Basic Information
Locus ID:
nbisL1-mrna-21863
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000226F_pilon | 1271101 | 1279598 | - | nbisL1-mrna-21863 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 54,783.52 Da | 53.35 | 70.25 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 120 | 172 | 1.61556E-26 | - |
| Pfam | PF12315 | Protein DA1 | 270 | 474 | 5.1E-97 | IPR022087 |
| Pfam | PF00412 | LIM domain | 120 | 173 | 6.4E-6 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 146 | 201 | 2.36E-6 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 113 | 145 | 1.32E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 116 | 190 | 1.5E-11 | - |
| SMART | SM00132 | lim_4 | 119 | 171 | 1.2E-7 | IPR001781 |
| SMART | SM00726 | uim | 43 | 62 | 0.29 | IPR003903 |
| SMART | SM00726 | uim | 74 | 93 | 0.078 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 118 | 178 | 11.3455 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 43 | 62 | 9.448441 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 74 | 93 | 9.039273 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 120 | 154 | - | IPR001781 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19270.1 | DA1. | 0 |
| RefSeq | XP_021612349.2 | protein DA1 [Manihot esculenta] | 0 |
| P0C7Q8 | Protein DA1 OS=Arabidopsis thaliana OX=3702 GN=DA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9VWW7 | LIM zinc-binding domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_05G164200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology