Basic Information
Locus ID:
nbisL1-mrna-21862
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Serine-threonine protein kinase, plant-type
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000226F_pilon | 1268836 | 1270858 | + | nbisL1-mrna-21862 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.15 | 61,141.20 Da | 45.70 | 85.61 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 191 | 234 | 3.22665E-4 | IPR018392 |
| Pfam | PF01476 | LysM domain | 192 | 235 | 0.0019 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 370 | 523 | 3.2E-32 | IPR000719 |
| SUPERFAMILY | SSF54106 | LysM domain | 190 | 236 | 8.5E-5 | IPR036779 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 332 | 523 | 1.8E-49 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 337 | 526 | 7.8E-50 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 186 | 246 | 7.0E-8 | IPR036779 |
| SMART | SM00220 | serkin_6 | 345 | 547 | 4.9E-10 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 315 | 547 | 25.347221 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 190 | 234 | 9.896017 | IPR018392 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 455 | 467 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_006375051.1 | lysM domain receptor-like kinase 4 [Populus trichocarpa] | 0 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 0 | |
| TrEMBL | B9MVF7 | Protein kinase domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G040000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology