Basic Information
Locus ID:
nbisL1-mrna-21858
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Tudor PWWP MBT superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 4664720 | 4667317 | - | nbisL1-mrna-21858 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 93,336.16 Da | 46.58 | 72.05 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 214 | 297 | 1.1238E-27 | - |
| Pfam | PF00855 | PWWP domain | 213 | 298 | 9.7E-15 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 205 | 331 | 5.96E-25 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 199 | 304 | 1.1E-22 | - |
| SMART | SM00293 | PWWP_4 | 211 | 272 | 0.0016 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 213 | 262 | 13.14012 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 694 | 721 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 506 | 525 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 415 | 461 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 841 | 865 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 461 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 694 | 710 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02950.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_021638436.1 | uncharacterized protein LOC110633905 isoform X1 [Hevea brasiliensis] | 0 |
| Q9LYZ0 | PWWP domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=PDP5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2JKQ6 | Uncharacterized protein MANES_08G003300 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology