Basic Information
Locus ID:
nbisL1-mrna-21849
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
40S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 4423270 | 4424015 | - | nbisL1-mrna-21849 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.69 | 13,427.44 Da | 44.40 | 90.00 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 22 | 116 | 2.6E-24 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 19 | 117 | 6.8E-27 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 6 | 119 | 4.7E-44 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 21 | 116 | 3.4E-32 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 18 | 117 | 7.3E-38 | IPR005729 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 55 | 70 | 1.7E-10 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 19 | 32 | 1.7E-10 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 77 | 91 | 1.7E-10 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 17 | 117 | 15.619525 | IPR001848 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47370.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_021614891.1 | 40S ribosomal protein S20-1 [Manihot esculenta] | 0 |
| Q9STY6 | Small ribosomal subunit protein uS10y OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1 | 0 | |
| TrEMBL | A0A251J9D7 | Ribosomal_S10 domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_14G033700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology