halophFGD

Basic Information

Locus ID: nbisL1-mrna-21811

Species & Taxonomic ID: Ceriops zippeliana & 413951

Genome Assembly: GCA_037897445.1

Description: RING-H2 finger protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
000560F_pilon	1294953	1298855	+	nbisL1-mrna-21811

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.16	25,726.15 Da	60.94	82.97	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16454	RING-H2_PA-TM-RING	87	130	2.75118E-16	-
Pfam	PF13639	Ring finger domain	87	130	3.3E-13	IPR001841
SUPERFAMILY	SSF57850	RING/U-box	78	136	1.79E-20	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	56	136	5.4E-20	IPR013083
SMART	SM00184	ring_2	88	129	3.3E-6	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	88	130	12.386007	IPR001841

Best hit

Source	Best Hit ID	Description
TAIR	AT1G49230.1	RING/U-box superfamily protein.
RefSeq	XP_012089860.2	RING-H2 finger protein ATL8 isoform X1 [Jatropha curcas]
Swiss-Prot	Q6NQG7	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1
TrEMBL	A0A6J1BEA4	RING-H2 finger protein ATL38-like OS=Herrania umbratica OX=108875 GN=LOC110425911 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg1878, jg29660
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1395, gene_9702
Amaranthaceae	Atriplex hortensis	1	Ah007122
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg35734, Sbi_jg4414, Sbi_jg49329, Sbi_jg7050, Sbi_jg758
Amaranthaceae	Salicornia europaea	2	Seu_jg3956, Seu_jg5842
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00000364, GOSA_00009728
Amaranthaceae	Suaeda glauca	4	Sgl11176, Sgl16574, Sgl25741, Sgl30874
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000014534, gene:ENSEOMG00000028666 ... gene:ENSEOMG00000034378, gene:ENSEOMG00000041986, gene:ENSEOMG00000047747
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0005430, CQ.Regalona.r1.2BG0024190 ... CQ.Regalona.r1.4AG0012220, CQ.Regalona.r1.4BG0014600
Anacardiaceae	Pistacia vera	2	pistato.v30003740, pistato.v30169980
Apiaceae	Apium graveolens	2	Ag2G00771, Ag6G01615
Arecaceae	Cocos nucifera	1	COCNU_07G007020
Arecaceae	Phoenix dactylifera	4	gene-LOC103716862, gene-LOC103719848, gene-LOC103720886 ... gene-LOC120109018
Asparagaceae	Asparagus officinalis	2	AsparagusV1_09.5.V1.1, AsparagusV1_10.1187.V1.1
Asteraceae	Flaveria trinervia	4	Ftri15G22996, Ftri17G23225, Ftri3G09806, Ftri6G24096
Casuarinaceae	Casuarina equisetifolia	2	Ceq05G0633, Ceq05G1190
Casuarinaceae	Casuarina glauca	2	Cgl05G0651, Cgl05G1202
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno14g04600
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate06g11880, gene.Thate08g18260
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-6122
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.1246, evm.TU.LG04.940
Plantaginaceae	Plantago ovata	2	Pov_00032142, Pov_00040210
Plumbaginaceae	Limonium bicolor	2	Lb1G05762, Lb3G19131
Poaceae	Echinochloa crus-galli	13	AH05.197, AH07.2022, AH07.2989, AH09.1984, BH04.278 ... BH05.227, BH07.1987, BH07.2812, BH09.2147, CH04.293, CH05.280, CH07.1840, CH09.2289
Poaceae	Eleusine coracana subsp. coracana	9	gene-QOZ80_2AG0132660, gene-QOZ80_2AG0140740 ... gene-QOZ80_2BG0188050, gene-QOZ80_2BG0196350, gene-QOZ80_4AG0306890, gene-QOZ80_4BG0337920, gene-QOZ80_5AG0381540, gene-QOZ80_9AG0674660, gene-QOZ80_9BG0698490
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.2HG0187030.1, HORVU.MOREX.r3.4HG0355390.1 ... HORVU.MOREX.r3.5HG0459680.1, HORVU.MOREX.r3.5HG0533650.1, HORVU.MOREX.r3.6HG0603580.1
Poaceae	Lolium multiflorum	8	gene-QYE76_003011, gene-QYE76_003128, gene-QYE76_022684 ... gene-QYE76_024356, gene-QYE76_024393, gene-QYE76_045661, gene-QYE76_045701, gene-QYE76_065269
Poaceae	Oryza coarctata	10	Oco03G011450, Oco03G018060, Oco04G011870, Oco04G018820 ... Oco07G013570, Oco08G013050, Oco21G001160, Oco22G002020, Oco23G001780, Oco24G001310
Poaceae	Oryza sativa	4	LOC_Os02g45390.1, LOC_Os04g48310.1, LOC_Os11g05300.1 ... LOC_Os12g05370.1
Poaceae	Paspalum vaginatum	5	gene-BS78_04G149800, gene-BS78_04G240900 ... gene-BS78_05G049600, gene-BS78_06G205000, gene-BS78_08G023900
Poaceae	Puccinellia tenuiflora	8	Pt_Chr0103656, Pt_Chr0103674, Pt_Chr0307336, Pt_Chr0307364 ... Pt_Chr0604406, Pt_Chr0604476, Pt_Chr0703136, Pt_Chr0703185
Poaceae	Sporobolus alterniflorus	12	Chr04G022160, Chr06G005180, Chr06G010710, Chr06G023880 ... Chr15G006760, Chr16G009460, Chr17G008470, Chr19G016450, Chr23G006180, Chr25G005120, Chr26G013420, Chr30G004940
Poaceae	Thinopyrum elongatum	5	Tel2E01G691300, Tel4E01G208600, Tel5E01G235300 ... Tel5E01G835900, Tel6E01G477800
Poaceae	Triticum dicoccoides	9	gene_TRIDC2AG057800, gene_TRIDC2BG060700 ... gene_TRIDC4AG029500, gene_TRIDC4BG020930, gene_TRIDC5AG023040, gene_TRIDC5BG023040, gene_TRIDC5BG080040, gene_TRIDC6AG039500, gene_TRIDC6BG046330
Poaceae	Triticum aestivum	15	TraesCS2A02G399700.1, TraesCS2B02G417700.1 ... TraesCS2D02G397200.1, TraesCS4A02G183700.1, TraesCS4A02G338900.1, TraesCS4B02G134900.1, TraesCS4D02G129700.1, TraesCS5A02G129900.1, TraesCS5B02G129800.1, TraesCS5B02G548200.1, TraesCS5D02G137400.1, TraesCS5D02G535300.1, TraesCS6A02G256500.1, TraesCS6B02G268900.1, TraesCS6D02G237700.1
Poaceae	Zea mays	5	Zm00001eb073580_P002, Zm00001eb092730_P001 ... Zm00001eb187170_P001, Zm00001eb242580_P002, Zm00001eb406570_P001
Poaceae	Zoysia japonica	3	nbis-gene-18907, nbis-gene-20838, nbis-gene-5600
Poaceae	Zoysia macrostachya	6	Zma_g13611, Zma_g16402, Zma_g16867, Zma_g21809, Zma_g24733 ... Zma_g25495
Portulacaceae	Portulaca oleracea	4	evm.TU.LG08.1485, evm.TU.LG19.1216, evm.TU.LG22.377 ... evm.TU.LG24.1217
Posidoniaceae	Posidonia oceanica	2	gene.Posoc05g22850, gene.Posoc06g11880
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_5_RagTag.320, evm.TU.Scaffold_9_RagTag.394
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-10897, nbisL1-mrna-26199
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-3398, nbisL1-mrna-7977
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-21811
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000003l.300, evm.TU.utg000004l.305 ... evm.TU.utg000006l.541
Rhizophoraceae	Kandelia obovata	3	Maker00004080, Maker00009873, Maker00013272
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-3645, nbisL1-mrna-6884, nbisL1-mrna-9227
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-12735, nbisL1-mrna-6987, nbisL1-mrna-7653
Salicaceae	Populus euphratica	4	populus_peu06134, populus_peu19993, populus_peu27773 ... populus_peu31722
Solanaceae	Lycium barbarum	3	gene-LOC132615118, gene-LOC132640098, gene-LOC132645663
Solanaceae	Solanum chilense	3	SOLCI001730600, SOLCI003539200, SOLCI003880300
Solanaceae	Solanum pennellii	3	gene-LOC107003319, gene-LOC107018791, gene-LOC107020669
Tamaricaceae	Reaumuria soongarica	1	STRG.32474_chr09_-
Tamaricaceae	Tamarix chinensis	3	TC02G1122, TC02G1127, TC11G1763
Zosteraceae	Zostera marina	1	Zosma01g31510.v3.1