Basic Information
Locus ID:
nbisL1-mrna-21804
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001310F_pilon | 128460 | 129446 | - | nbisL1-mrna-21804 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 37,140.61 Da | 49.74 | 77.07 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 189 | 230 | 1.56623E-23 | - |
| Pfam | PF13639 | Ring finger domain | 188 | 230 | 1.3E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 168 | 236 | 3.09E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 156 | 235 | 4.3E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 189 | 229 | 9.0E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 189 | 230 | 12.326995 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015582234.2 | E3 ubiquitin-protein ligase RZF1 [Ricinus communis] | 0 |
| Q94AK4 | E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1 | 0 | |
| TrEMBL | B9SZJ6 | Zinc finger protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0065560 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology