Basic Information
Locus ID:
nbisL1-mrna-2180
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 2403914 | 2408759 | - | nbisL1-mrna-2180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 76,639.26 Da | 37.90 | 99.94 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 319 | 361 | 1.06624E-27 | - |
| Pfam | PF04564 | U-box domain | 315 | 385 | 5.5E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 442 | 481 | 4.5E-11 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 525 | 563 | 2.0E-6 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 314 | 390 | 1.81E-30 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 411 | 686 | 1.66E-50 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 315 | 388 | 3.0E-29 | IPR013083 |
| Gene3D | G3DSA:1.20.930.20 | - | 75 | 188 | 9.9E-11 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 526 | 691 | 1.2E-27 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 389 | 525 | 3.2E-28 | IPR011989 |
| SMART | SM00185 | arm_5 | 606 | 646 | 280.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 524 | 564 | 0.034 | IPR000225 |
| SMART | SM00185 | arm_5 | 442 | 482 | 1.6E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 565 | 605 | 11.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 483 | 523 | 0.028 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 318 | 381 | 1.2E-33 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 453 | 495 | 14.0524 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 314 | 388 | 42.691113 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 494 | 536 | 9.1874 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_021657630.1 | U-box domain-containing protein 14 [Hevea brasiliensis] | 0 |
| Q8VZ40 | U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JW42 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology