Basic Information
Locus ID:
nbisL1-mrna-21792
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 12424657 | 12430775 | - | nbisL1-mrna-21792 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 17,706.07 Da | 42.38 | 77.50 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 10 | 101 | 5.3E-9 | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G16670.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_031266844.1 | - | 0 |
| Q93YN1 | Cold-responsive protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CRPK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2IUA3 | Uncharacterized protein MANES_15G092500 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0004010, CQ.Regalona.r1.8BG0004180 |
| Apiaceae | Apium graveolens | 2 | Ag10G01027, Ag4G01609 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-31074, nbis-gene-47989 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30175 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.124 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-21773, nbisL1-mrna-21792, nbisL1-mrna-26110 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4668 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4448 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19434 |
| Salicaceae | Populus euphratica | 2 | populus_peu17329, populus_peu37223 |