Basic Information
Locus ID:
nbisL1-mrna-21789
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
F-box Kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 3103278 | 3104309 | + | nbisL1-mrna-21789 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 38,439.77 Da | 52.56 | 69.88 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 12 | 51 | 5.4E-5 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 163 | 208 | 1.3E-8 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 120 | 160 | 1.5E-6 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 87 | 274 | 5.75E-34 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 54 | 1.44E-8 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 48 | 305 | 3.7E-33 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 13 | 47 | 2.2E-5 | - |
| SMART | SM00256 | fbox_2 | 14 | 54 | 4.1E-5 | IPR001810 |
| SMART | SM00612 | kelc_smart | 125 | 173 | 8.7E-5 | IPR006652 |
| SMART | SM00612 | kelc_smart | 174 | 221 | 9.9E-4 | IPR006652 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 8 | 55 | 8.517177 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59940.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_011047101.1 | PREDICTED: F-box/kelch-repeat protein At1g15670-like [Populus euphratica] | 0 |
| Q9M1Y1 | F-box/kelch-repeat protein SKIP20 OS=Arabidopsis thaliana OX=3702 GN=SKIP20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2L2B4 | F-box/kelch-repeat protein At1g15670-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology