Basic Information
Locus ID:
nbisL1-mrna-21783
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
ER-associated misfolded protein catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 2991645 | 2992883 | - | nbisL1-mrna-21783 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.63 | 45,781.78 Da | 50.88 | 62.48 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 114 | 286 | 5.9E-64 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 101 | 208 | 7.2E-34 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 210 | 284 | 3.4E-28 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 363 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 375 | 398 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 102 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G29070.2 | Ubiquitin fusion degradation UFD1 family protein. | 0 |
| RefSeq | XP_021669194.1 | ubiquitin fusion degradation protein 1 homolog [Hevea brasiliensis] | 0 |
| P70362 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Mus musculus OX=10090 GN=Ufd1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6A6KKQ9 | Ubiquitin fusion degradation protein 1 homolog OS=Hevea brasiliensis OX=3981 GN=GH714_036768 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology