Basic Information
Locus ID:
nbisL1-mrna-21778
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Short Name:
PHOT2
Description:
phototropin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001414F_pilon | 1182145 | 1198591 | - | nbisL1-mrna-21778 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.82 | 106,940.28 Da | 45.31 | 79.62 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00130 | PAS | 448 | 540 | 9.45687E-11 | IPR000014 |
| CDD | cd05574 | STKc_phototropin_like | 624 | 936 | 0.0 | - |
| CDD | cd00130 | PAS | 183 | 272 | 8.95069E-8 | IPR000014 |
| Pfam | PF13426 | PAS domain | 177 | 273 | 6.1E-20 | IPR000014 |
| Pfam | PF13426 | PAS domain | 448 | 540 | 4.7E-20 | IPR000014 |
| Pfam | PF00069 | Protein kinase domain | 628 | 912 | 1.4E-61 | IPR000719 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 177 | 269 | 6.0E-24 | IPR035965 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 443 | 540 | 4.19E-24 | IPR035965 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 601 | 938 | 1.34E-82 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 625 | 709 | 5.0E-95 | - |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 170 | 322 | 2.4E-47 | - |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 414 | 578 | 4.1E-55 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 710 | 922 | 5.0E-95 | - |
| SMART | SM00086 | pac_2 | 233 | 275 | 5.4E-4 | IPR001610 |
| SMART | SM00220 | serkin_6 | 626 | 912 | 4.0E-89 | IPR000719 |
| SMART | SM00091 | pas_2 | 427 | 496 | 1.1 | IPR000014 |
| SMART | SM00086 | pac_2 | 502 | 544 | 1.7E-7 | IPR001610 |
| SMART | SM00091 | pas_2 | 158 | 227 | 0.2 | IPR000014 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 183 | 273 | 8.6E-10 | IPR000014 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 451 | 540 | 1.8E-10 | IPR000014 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 626 | 912 | 45.488171 | IPR000719 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 156 | 229 | 12.517716 | IPR000014 |
| ProSiteProfiles | PS50113 | PAC domain profile. | 499 | 553 | 11.650523 | IPR000700 |
| ProSiteProfiles | PS50113 | PAC domain profile. | 230 | 284 | 10.321583 | IPR000700 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 425 | 498 | 10.457512 | IPR000014 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 632 | 655 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 747 | 759 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58140.1 | phototropin 2. Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation. Localized to the Golgi apparatus under the induction of blue light. | 0 |
| RefSeq | XP_021606827.1 | phototropin-2 isoform X1 [Manihot esculenta] | 0 |
| P93025 | Phototropin-2 OS=Arabidopsis thaliana OX=3702 GN=PHOT2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2C9W849 | LOV domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_03G096100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg26617, jg37943 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_26579, gene_5952 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009900, Ah028129 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g174900, BVRB_9g216030 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg11175, Sbi_jg1878, Sbi_jg34642, Sbi_jg46151 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg20490, Seu_jg2880 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00003095, GOSA_00005464 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl55721, Sgl60935, Sgl73166, Sgl76710 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000005298, gene:ENSEOMG00000012984 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.7AG0001910, CQ.Regalona.r1.7BG0004840 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30059470, pistato.v30107130 |
| Apiaceae | Apium graveolens | 4 | Ag10G00514, Ag11G04260, Ag1G00172, Ag5G00026 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G001240 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103702839, gene-LOC103711883, gene-LOC120104603 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.1579.V1.1, AsparagusV1_08.3443.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G34116, Ftri12G17732, Ftri18G22640 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G45780.1, AT5G58140.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10002386m.g.v1.0, Thhalv10012609m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp5g15740.v2.2, Sp6g19820.v2.2, SpUn0096_0010.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g037570.2N, BniB06g024850.2N, BniB08g013390.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq08G2377, Ceq09G0011 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G2568, Cgl09G0012 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno02g05450, gene.Cymno05g16010, gene.Cymno06g08120 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0229s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g33280, gene.Thate07g07900 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11050, nbisL1-mrna-585 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG08.475, evm.TU.LG09.993 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00025324, Pov_00037016 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G00638, Lb3G18144, Lb3G19266, Lb4G21672 |
| Poaceae | Echinochloa crus-galli | 6 | AH05.89, AH09.474, BH04.19, BH09.519, CH04.17, CH09.569 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_4AG0323350, gene-QOZ80_4BG0352460 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0159250.1, HORVU.MOREX.r3.5HG0467030.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_003830, gene-QYE76_043366 |
| Poaceae | Oryza coarctata | 3 | Oco07G002660, Oco08G002960, Ocoptg000061lG000070 |
| Poaceae | Oryza sativa | 3 | LOC_Os04g23890.2, LOC_Os11g01140.1, LOC_Os12g01140.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G001200, gene-BS78_07G084800 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0303144, Pt_Chr0303196, Pt_Chr0404815, Pt_Chr0705170 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr07G022560, Chr21G008710, Chr23G016080, Chr26G003850 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G491700, Tel5E01G270700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG039210, gene_TRIDC2BG042220 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G272400.1, TraesCS2B02G290500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb042710_P003, Zm00001eb163120_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25863, nbis-gene-8070 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g21060, Zma_g24578 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.1540, evm.TU.LG09.342, evm.TU.LG19.1382 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g35500, gene.Posoc02g23820, gene.Posoc03g11970 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_13_RagTag.779, evm.TU.Scaffold_1_RagTag.1044 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-30259, nbisL1-mrna-6560 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13434, nbisL1-mrna-19704 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16150, nbisL1-mrna-21161 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.455, evm.TU.utg000016l.887 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015254 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11071, nbisL1-mrna-4374 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15027, nbisL1-mrna-21778 |
| Salicaceae | Populus euphratica | 4 | populus_peu01127, populus_peu08384, populus_peu08385 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600827, gene-LOC132645257 |
| Solanaceae | Solanum chilense | 2 | SOLCI002567500, SOLCI003173700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107003486, gene-LOC107004580 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.4869_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0298, TC11G0028 |
| Zosteraceae | Zostera marina | 2 | Zosma02g21400.v3.1, Zosma04g17980.v3.1 |