Basic Information
Locus ID:
nbisL1-mrna-21756
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Seven transmembrane domain-containing tyrosine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 11971668 | 11976602 | - | nbisL1-mrna-21756 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 49,374.70 Da | 34.57 | 88.58 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 169 | 395 | 4.75348E-80 | - |
| Pfam | PF00069 | Protein kinase domain | 166 | 359 | 1.9E-48 | IPR000719 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 66 | 137 | 4.5E-10 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 61 | 140 | 1.35E-19 | IPR036770 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 164 | 383 | 2.7E-63 | IPR011009 |
| Gene3D | G3DSA:1.25.40.20 | - | 58 | 151 | 1.0E-21 | IPR036770 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 152 | 406 | 1.7E-62 | - |
| SMART | SM00248 | ANK_2a | 116 | 146 | 3600.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 2.8E-5 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 83 | 115 | 12.699804 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 14.07834 | IPR002110 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 163 | 406 | 37.771008 | IPR000719 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 283 | 295 | - | IPR008266 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 169 | 190 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G18950.2 | - | 0 |
| RefSeq | XP_021653079.1 | serine/threonine-protein kinase STY8-like [Hevea brasiliensis] | 0 |
| Q93Z30 | Serine/threonine-protein kinase 12 OS=Arabidopsis thaliana OX=3702 GN=BHP PE=1 SV=1 | 0 | |
| TrEMBL | A0A3N7ERY3 | Protein kinase domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G158950 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29348 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30010930 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1310.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G14906 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6135, nbisL1-mrna-9505 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016722 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.488 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21756 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-7321, nbisL1-mrna-7322, nbisL1-mrna-7323 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.269 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017523 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19640 |
| Salicaceae | Populus euphratica | 1 | populus_peu31675 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610332 |
| Solanaceae | Solanum chilense | 1 | SOLCI005577300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032428 |