Basic Information
Locus ID:
nbisL1-mrna-21729
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 5010752 | 5011084 | - | nbisL1-mrna-21729 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.97 | 12,356.92 Da | 19.58 | 51.36 | -1.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 52 | 87 | 1.06E-5 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 58 | 87 | 1.4E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 60 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021638610.1 | uncharacterized protein LOC110634036 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A438FD99 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1270 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg17164, jg21289 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036498 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30283510, pistato.v30286110 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2565.V1.1 |
| Asteraceae | Flaveria trinervia | 10 | Ftri12G22046, Ftri14G07097, Ftri14G29567, Ftri15G09954 ... |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10000485m.g.v1.0, Thhalv10000559m.g.v1.0 ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020503 |
| Plumbaginaceae | Limonium bicolor | 7 | Lb0G36934, Lb1G07027, Lb2G09763, Lb3G16435, Lb5G28942 ... |
| Poaceae | Echinochloa crus-galli | 6 | BH03.593, BH08.1422, CH03.1058, CH09.1199, CH09.1422 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-22814, nbis-gene-34703 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19756 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000001l.151 |
| Rhizophoraceae | Rhizophora apiculata | 5 | nbisL1-mrna-16804, nbisL1-mrna-19090, nbisL1-mrna-20648 ... |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23328 |
| Salicaceae | Populus euphratica | 5 | populus_peu08647, populus_peu28824, populus_peu30004 ... |
| Solanaceae | Lycium barbarum | 6 | gene-LOC132619627, gene-LOC132619940, gene-LOC132624744 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI000638400, SOLCI006302800 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107001448, gene-LOC107009891, gene-LOC114074843 |
| Tamaricaceae | Reaumuria soongarica | 10 | MSTRG.11085_chr06_-, STRG.3923_chr02_-, gene_11099 ... |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1817 |