Basic Information
Locus ID:
nbisL1-mrna-21720
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 11429293 | 11431276 | - | nbisL1-mrna-21720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 44,221.66 Da | 50.09 | 97.63 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 196 | 326 | 2.6E-17 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 35 | 101 | 3.7E-5 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 180 | 327 | 3.79E-22 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 29 | 134 | 3.79E-17 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 21 | 172 | 9.6E-10 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 177 | 327 | 1.0E-15 | IPR036378 |
| SMART | SM00554 | fasc_3 | 222 | 327 | 7.2E-13 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 184 | 324 | 15.041838 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 23 | 170 | 11.208603 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 385 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 405 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60900.1 | FASCICLIN-like arabinogalactan-protein 10. | 0 |
| RefSeq | XP_021692832.1 | fasciclin-like arabinogalactan protein 10 [Hevea brasiliensis] | 0 |
| Q9LZX4 | Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana OX=3702 GN=FLA10 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2QP57 | Fasciclin-like arabinogalactan protein 8 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology