Basic Information
Locus ID:
nbisL1-mrna-21701
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
spa1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000004F_pilon | 1129132 | 1140349 | + | nbisL1-mrna-21701 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 104,560.93 Da | 58.79 | 84.03 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 758 | 793 | 0.012 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 60 | 364 | 5.32E-20 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 595 | 927 | 2.23E-41 | IPR036322 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 101 | 371 | 6.4E-24 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 570 | 852 | 7.6E-80 | IPR015943 |
| SMART | SM00320 | WD40_4 | 890 | 929 | 38.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 677 | 711 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 635 | 674 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 834 | 874 | 33.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 712 | 751 | 0.25 | IPR001680 |
| SMART | SM00320 | WD40_4 | 755 | 793 | 1.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 589 | 624 | 2.2 | IPR001680 |
| SMART | SM00220 | serkin_6 | 33 | 359 | 1.4E-5 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 762 | 795 | 11.845179 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 14 | 359 | 12.711427 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 762 | 795 | 9.889235 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 780 | 794 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 257 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.1 | SPA1-related 3. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA3 (and SPA4) predominantly regulates elongation growth in adult plants. | 0 |
| RefSeq | XP_021655518.1 | protein SPA1-RELATED 3-like isoform X1 [Hevea brasiliensis] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MKL9 | Protein SPA1-RELATED 3 isoform X2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology