Basic Information
Locus ID:
nbisL1-mrna-21632
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 10343240 | 10348931 | + | nbisL1-mrna-21632 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 101,356.42 Da | 56.09 | 84.68 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 836 | 877 | 5.32193E-23 | - |
| CDD | cd01989 | STK_N | 54 | 207 | 7.18188E-48 | - |
| Pfam | PF00069 | Protein kinase domain | 552 | 800 | 9.8E-40 | IPR000719 |
| Pfam | PF04564 | U-box domain | 833 | 902 | 1.2E-17 | IPR003613 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 528 | 810 | 2.29E-66 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 829 | 901 | 9.71E-24 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 46 | 180 | 2.2E-5 | IPR014729 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 830 | 902 | 1.3E-27 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 620 | 818 | 4.0E-47 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 532 | 619 | 2.2E-25 | - |
| SMART | SM00220 | serkin_6 | 547 | 812 | 7.4E-32 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 835 | 898 | 1.1E-28 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 547 | 813 | 34.265778 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 831 | 902 | 38.843235 | IPR003613 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 665 | 677 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 553 | 574 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 313 | - | - |
| Coils | Coil | Coil | 422 | 456 | - | - |
| Coils | Coil | Coil | 464 | 519 | - | - |
| Coils | Coil | Coil | 377 | 415 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_034926351.1 | U-box domain-containing protein 33-like [Populus alba] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2JS06 | U-box domain-containing protein 33 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology