Basic Information
Locus ID:
nbisL1-mrna-2160
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 20632671 | 20636081 | - | nbisL1-mrna-2160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 108,523.82 Da | 35.58 | 97.36 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 169 | 227 | 2.5E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 39 | 78 | 1.0E-10 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 643 | 702 | 1.1E-7 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 900 | 1004 | 3.0E-5 | IPR001245 |
| Pfam | PF00560 | Leucine Rich Repeat | 310 | 332 | 0.46 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 262 | 284 | 0.0061 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 134 | 473 | 3.69E-56 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 574 | 753 | 9.07E-34 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 846 | 1009 | 1.41E-20 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 353 | 487 | 1.1E-21 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 38 | 239 | 1.1E-41 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 240 | 352 | 1.3E-29 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 515 | 766 | 1.0E-47 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 883 | 1012 | 2.0E-23 | - |
| SMART | SM00369 | LRR_typ_2 | 142 | 165 | 350.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 665 | 689 | 8.9 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 166 | 189 | 4.1 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 617 | 640 | 96.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 308 | 332 | 4.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 190 | 214 | 230.0 | IPR003591 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 863 | 885 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 665 | 678 | 5.0E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 311 | 324 | 5.0E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02130.1 | receptor-like protein kinase 2. | 0 |
| RefSeq | XP_002323902.1 | LRR receptor-like serine/threonine-protein kinase RPK2 [Populus trichocarpa] | 0 |
| Q9S7I6 | LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana OX=3702 GN=RPK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2M9E7 | Uncharacterized protein MANES_01G096300 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology