Basic Information
Locus ID:
nbisL1-mrna-21588
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 9857505 | 9864664 | + | nbisL1-mrna-21588 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 111,293.46 Da | 52.19 | 103.78 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 265 | 306 | 2.66803E-20 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 532 | 571 | 1.6E-5 | IPR000225 |
| Pfam | PF04564 | U-box domain | 265 | 331 | 1.2E-16 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 780 | 998 | 6.58E-18 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 339 | 848 | 1.59E-35 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 252 | 333 | 2.25E-24 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 340 | 524 | 9.5E-18 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 241 | 339 | 1.9E-24 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 525 | 631 | 1.1E-13 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 869 | 1006 | 2.2E-13 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 632 | 856 | 2.7E-21 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 16 | 128 | 1.9E-5 | IPR036537 |
| SMART | SM00185 | arm_5 | 531 | 571 | 0.0087 | IPR000225 |
| SMART | SM00185 | arm_5 | 876 | 916 | 35.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 753 | 799 | 220.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 365 | 405 | 180.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 920 | 960 | 66.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 802 | 842 | 36.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 572 | 615 | 240.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 264 | 327 | 7.7E-23 | IPR003613 |
| SMART | SM00185 | arm_5 | 667 | 708 | 270.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 542 | 584 | 9.4674 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 260 | 334 | 30.351362 | IPR003613 |
| Coils | Coil | Coil | 67 | 87 | - | - |
| Coils | Coil | Coil | 195 | 222 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76390.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_012083144.1 | U-box domain-containing protein 44 [Jatropha curcas] | 0 |
| Q10FT0 | U-box domain-containing protein 24 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JR89 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10276, jg29483 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30006200, pistato.v30165330 |
| Apiaceae | Apium graveolens | 1 | Ag11G03591 |
| Arecaceae | Cocos nucifera | 1 | scaffold021460G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719070 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.421.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G26855, Ftri5G33561 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1296 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1451 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2849 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.629 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21588 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9626 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7428 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.191 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017527 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1687 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5412 |
| Salicaceae | Populus euphratica | 6 | populus_peu27526, populus_peu27527, populus_peu27984 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132632125, gene-LOC132644366, gene-LOC132645405 |
| Solanaceae | Solanum chilense | 2 | SOLCI000591400, SOLCI005051300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008446 |