Basic Information
Locus ID:
nbisL1-mrna-21579
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr09 | 9685758 | 9687308 | - | nbisL1-mrna-21579 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 57,434.43 Da | 51.97 | 82.38 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11449 | bHLH_AtAIB_like | 326 | 387 | 6.22651E-39 | - |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 332 | 377 | 4.7E-10 | IPR011598 |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 26 | 224 | 3.1E-51 | IPR025610 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 328 | 391 | 4.19E-17 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 326 | 394 | 4.2E-16 | IPR036638 |
| SMART | SM00353 | finulus | 334 | 383 | 1.9E-15 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 328 | 377 | 16.761221 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 296 | - | - |
| Coils | Coil | Coil | 367 | 394 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00870.1 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein. | 0 |
| RefSeq | XP_007051457.2 | PREDICTED: transcription factor bHLH14 [Theobroma cacao] | 0 |
| O23090 | Transcription factor bHLH14 OS=Arabidopsis thaliana OX=3702 GN=BHLH14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2NYG9 | BHLH domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology