Basic Information
Locus ID:
nbisL1-mrna-21576
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
transcriptional co-repressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000144F_pilon | 235395 | 249408 | - | nbisL1-mrna-21576 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 65,764.54 Da | 50.56 | 81.09 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 305 | 594 | 3.52435E-49 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 353 | 383 | 6.5E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 478 | 509 | 0.011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 316 | 341 | 6.3E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 301 | 594 | 3.33E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 304 | 594 | 4.1E-54 | IPR015943 |
| SMART | SM00320 | WD40_4 | 513 | 552 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 387 | 427 | 0.0047 | IPR001680 |
| SMART | SM00320 | WD40_4 | 302 | 341 | 3.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 555 | 594 | 0.071 | IPR001680 |
| SMART | SM00320 | WD40_4 | 471 | 509 | 2.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 383 | 2.7E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 562 | 594 | 11.678087 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 562 | 594 | 11.075592 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 309 | 344 | 11.009724 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 309 | 344 | 9.230148 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 351 | 383 | 13.85027 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 394 | 429 | 9.606159 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 351 | 383 | 11.471045 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 414 | 428 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 328 | 342 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 581 | 594 | 7.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 370 | 384 | 7.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 328 | 342 | 7.2E-6 | IPR020472 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.1 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_021667376.1 | transcriptional corepressor LEUNIG-like [Hevea brasiliensis] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9U976 | LisH domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_16G029200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology