Basic Information
Locus ID:
nbisL1-mrna-21549
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 8549189 | 8549581 | + | nbisL1-mrna-21549 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.74 | 13,759.36 Da | 30.05 | 83.23 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 70 | 1.5E-5 | IPR013210 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 27 | 126 | 1.8E-8 | IPR032675 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.1 | STRUBBELIG-receptor family 6. | 0 |
| RefSeq | XP_015573618.2 | probable inactive receptor kinase At2g26730 [Ricinus communis] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067LA99 | Protein kinase domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_09635 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg13052, jg25818, jg25819, jg40347, jg40348 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30138890 |
| Apiaceae | Apium graveolens | 5 | Ag10G00153, Ag4G00289, Ag4G00297, Ag4G00785, Ag9G00499 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G009190, COCNU_05G006690 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103700918 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2324.V1.1 |
| Asteraceae | Flaveria trinervia | 5 | Ftri10G25281, Ftri18G03286, Ftri18G12578, Ftri18G12716 ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G1803, Ceq04G1892 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1879 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g11620, gene.Thate05g00280 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10309 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.790 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00022070, Pov_00022071, Pov_00023344 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.1767, BH03.1919, CH03.2104 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0533950, gene-QOZ80_6BG0486990 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0477560.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_004929 |
| Poaceae | Oryza coarctata | 1 | Oco18G003800 |
| Poaceae | Oryza sativa | 2 | LOC_Os09g20970.1, LOC_Os10g24850.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G169600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0702443 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G011030, Chr14G013160, Chr21G012290 |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G954300, Tel2E01G954400, Tel5E01G332300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG032100, gene_TRIDC5BG033730 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G198400.1, TraesCS5B02G197100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb311540_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-19938, nbis-gene-30962, nbis-gene-30963 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30245, Zma_g32478 |
| Rhizophoraceae | Bruguiera sexangula | 5 | evm.TU.Scaffold_11_RagTag.992, evm.TU.Scaffold_3_RagTag.1867 ... |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-14676, nbisL1-mrna-15000, nbisL1-mrna-2309 ... |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-15594, nbisL1-mrna-20383, nbisL1-mrna-475 |
| Rhizophoraceae | Ceriops zippeliana | 5 | nbisL1-mrna-12560, nbisL1-mrna-153, nbisL1-mrna-1838 ... |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000019l.35, evm.TU.utg000010l.93 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11850, nbisL1-mrna-21549 |
| Salicaceae | Populus euphratica | 2 | populus_peu28608, populus_peu30069 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132634233, gene-LOC132643745 |
| Solanaceae | Solanum chilense | 2 | SOLCI003433400, SOLCI003578500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107004058, gene-LOC107012999 |